IL_8FIZ_120
3D structure
- PDB id
- 8FIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAG*CCUGC
- Length
- 9 nucleotides
- Bulged bases (A, C, G, U)
- 1559U
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FIZ_120 not in the Motif Atlas
- Geometric match to IL_5J7L_296
- Geometric discrepancy: 0.1663
- The information below is about IL_5J7L_296
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_55178.1
- Basepair signature
- cWW-cWW-tWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8FIZ|1|BA|G|1432
8FIZ|1|BA|A|1433
8FIZ|1|BA|A|1434
8FIZ|1|BA|G|1435
*
8FIZ|1|BA|C|1557
8FIZ|1|BA|C|1558
8FIZ|1|BA|U|1559
8FIZ|1|BA|G|1560
8FIZ|1|BA|C|1561
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BD
- 50S ribosomal protein L2
Coloring options: