IL_8FIZ_120

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases (A, C, G, U)

1559U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_120 not in the Motif Atlas

Geometric match to IL_5J7L_296

Geometric discrepancy: 0.1663

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_55178.1

Basepair signature

cWW-cWW-tWW-cWW

Number of instances in this motif group

4

Unit IDs

8FIZ|1|BA|G|1432
8FIZ|1|BA|A|1433
8FIZ|1|BA|A|1434
8FIZ|1|BA|G|1435
*
8FIZ|1|BA|C|1557
8FIZ|1|BA|C|1558
8FIZ|1|BA|U|1559
8FIZ|1|BA|G|1560
8FIZ|1|BA|C|1561

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L2