IL_8FIZ_137

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8FIZ|1|BA|A|1801, 8FIZ|1|BA|C|1816, 8FIZ|1|BA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_137 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1049

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8FIZ|1|BA|U|1798
8FIZ|1|BA|G|1799
8FIZ|1|BA|C|1800
8FIZ|1|BA|A|1801
8FIZ|1|BA|A|1802
8FIZ|1|BA|A|1803
8FIZ|1|BA|C|1804
*
8FIZ|1|BA|G|1813
8FIZ|1|BA|G|1814
8FIZ|1|BA|A|1815
8FIZ|1|BA|C|1816
8FIZ|1|BA|G|1817
8FIZ|1|BA|U|1818
8FIZ|1|BA|A|1819
8FIZ|1|BA|U|1820
8FIZ|1|BA|A|1821

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2