IL_8FIZ_164

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8FIZ|1|BA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_164 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1047

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8FIZ|1|BA|C|2636
8FIZ|1|BA|U|2637
8FIZ|1|BA|G|2638
8FIZ|1|BA|A|2639
8FIZ|1|BA|G|2640
*
8FIZ|1|BA|C|2774
8FIZ|1|BA|G|2775
8FIZ|1|BA|A|2776
8FIZ|1|BA|G|2777
8FIZ|1|BA|A|2778
8FIZ|1|BA|U|2779
8FIZ|1|BA|G|2780
8FIZ|1|BA|A|2781
8FIZ|1|BA|G|2782

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BR

50S ribosomal protein L13