IL_8FIZ_165

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_165 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.1632

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8FIZ|1|BA|C|2652
8FIZ|1|BA|U|2653
8FIZ|1|BA|A|2654
8FIZ|1|BA|G|2655
8FIZ|1|BA|U|2656
8FIZ|1|BA|A|2657
8FIZ|1|BA|C|2658
*
8FIZ|1|BA|G|2663
8FIZ|1|BA|G|2664
8FIZ|1|BA|A|2665
8FIZ|1|BA|C|2666
8FIZ|1|BA|C|2667
8FIZ|1|BA|G|2668

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BJ

50S ribosomal protein L6