IL_8FIZ_169

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

8FIZ|1|BA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_169 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1288

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8FIZ|1|BA|G|2737
8FIZ|1|BA|A|2738
8FIZ|1|BA|U|2739
8FIZ|1|BA|A|2740
8FIZ|1|BA|A|2741
8FIZ|1|BA|G|2742
*
8FIZ|1|BA|C|2762
8FIZ|1|BA|G|2763
8FIZ|1|BA|A|2764
8FIZ|1|BA|A|2765
8FIZ|1|BA|A|2766
8FIZ|1|BA|C|2767

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BJ

50S ribosomal protein L6

Chain BP

50S ribosomal protein L36

Chain BR

50S ribosomal protein L13