IL_8FIZ_172

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGC*GUAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_172 not in the Motif Atlas

Geometric match to IL_5TBW_145

Geometric discrepancy: 0.2636

The information below is about IL_5TBW_145

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8FIZ|1|BA|G|2838
8FIZ|1|BA|G|2839
8FIZ|1|BA|C|2840
*
8FIZ|1|BA|G|2877
8FIZ|1|BA|U|2878
8FIZ|1|BA|A|2879
8FIZ|1|BA|C|2880

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BV

50S ribosomal protein L17

Chain BW

50S ribosomal protein L19