IL_8FIZ_178
3D structure
- PDB id
- 8FIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- ACCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FIZ_178 not in the Motif Atlas
- Homologous match to IL_5J7L_358
- Geometric discrepancy: 0.1834
- The information below is about IL_5J7L_358
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.11
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
8FIZ|1|BC|A|34
8FIZ|1|BC|C|35
8FIZ|1|BC|C|36
8FIZ|1|BC|C|37
8FIZ|1|BC|C|38
*
8FIZ|1|BC|G|44
8FIZ|1|BC|A|45
8FIZ|1|BC|A|46
8FIZ|1|BC|C|47
8FIZ|1|BC|U|48
Current chains
- Chain BC
- 5s rRNA
Nearby chains
- Chain AV
- 50S ribosomal protein L31
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BG
- 50S ribosomal protein L5
- Chain BH
- 50S ribosomal protein L18
Coloring options: