IL_8FIZ_184
3D structure
- PDB id
- 8FIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGAGUACGG*UUAAAAC
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FIZ_184 not in the Motif Atlas
- Homologous match to IL_6CZR_146
- Geometric discrepancy: 0.164
- The information below is about IL_6CZR_146
- Detailed Annotation
- 9x7 Sarcin-Ricin with inserted C; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_68633.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
8FIZ|1|AA|G|887
8FIZ|1|AA|G|888
8FIZ|1|AA|A|889
8FIZ|1|AA|G|890
8FIZ|1|AA|U|891
8FIZ|1|AA|A|892
8FIZ|1|AA|C|893
8FIZ|1|AA|G|894
8FIZ|1|AA|G|895
*
8FIZ|1|AA|U|904
8FIZ|1|AA|U|905
8FIZ|1|AA|A|906
8FIZ|1|AA|A|907
8FIZ|1|AA|A|908
8FIZ|1|AA|A|909
8FIZ|1|AA|C|910
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AC
- 30S ribosomal protein S12
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: