IL_8FIZ_192

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAGGU*AUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_192 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.2728

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

8FIZ|1|BA|U|1720
8FIZ|1|BA|G|1721
8FIZ|1|BA|A|1722
8FIZ|1|BA|G|1723
8FIZ|1|BA|G|1724
8FIZ|1|BA|U|1725
*
8FIZ|1|BA|A|1735
8FIZ|1|BA|U|1736
8FIZ|1|BA|G|1737
8FIZ|1|BA|G|1738
8FIZ|1|BA|A|1739
8FIZ|1|BA|G|1740

Current chains

Chain BA

23S rRNA

Nearby chains