IL_8FKP_019
3D structure
- PDB id
- 8FKP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.85 Å
Loop
- Sequence
- CUCGUGG*CGG
- Length
- 10 nucleotides
- Bulged bases
- 8FKP|1|L3|C|185, 8FKP|1|L3|G|186
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FKP_019 not in the Motif Atlas
- Geometric match to IL_5Z1I_003
- Geometric discrepancy: 0.2582
- The information below is about IL_5Z1I_003
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_31737.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
8FKP|1|L3|C|183
8FKP|1|L3|U|184
8FKP|1|L3|C|185
8FKP|1|L3|G|186
8FKP|1|L3|U|187
8FKP|1|L3|G|188
8FKP|1|L3|G|189
*
8FKP|1|L3|C|252
8FKP|1|L3|G|253
8FKP|1|L3|G|254
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L6
- 60S ribosomal protein L13
- Chain LW
- 60S ribosomal protein L37
- Chain SO
- Ribosome biogenesis protein BRX1 homolog
- Chain SZ
- Nucleolar protein 16
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