IL_8FKP_026

3D structure

PDB id

8FKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GAG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKP_026 not in the Motif Atlas

Geometric match to IL_3NJ7_004

Geometric discrepancy: 0.1381

The information below is about IL_3NJ7_004

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8FKP|1|L3|G|462
8FKP|1|L3|A|463
8FKP|1|L3|G|464
*
8FKP|1|L3|C|691
8FKP|1|L3|A|692
8FKP|1|L3|C|693

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NM

Protein MAK16 homolog

Chain NQ

WD repeat-containing protein 74