IL_8FKQ_059

3D structure

PDB id

8FKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8FKQ|1|L3|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKQ_059 not in the Motif Atlas

Geometric match to IL_5AOX_003

Geometric discrepancy: 0.3463

The information below is about IL_5AOX_003

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8FKQ|1|L3|C|4582
8FKQ|1|L3|C|4583
8FKQ|1|L3|A|4584
8FKQ|1|L3|U|4585
*
8FKQ|1|L3|A|4717
8FKQ|1|L3|G|4718
8FKQ|1|L3|G|4719
8FKQ|1|L3|C|4720
8FKQ|1|L3|G|4721

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain LN

60S ribosomal protein L3

Chain NN

Suppressor of SWI4 1 homolog