IL_8FKS_005
3D structure
- PDB id
- 8FKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State B2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.88 Å
Loop
- Sequence
- GCC*GAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FKS_005 not in the Motif Atlas
- Geometric match to IL_3ICQ_003
- Geometric discrepancy: 0.1674
- The information below is about IL_3ICQ_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70707.3
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 70
Unit IDs
8FKS|1|L1|G|139
8FKS|1|L1|C|140
8FKS|1|L1|C|141
*
8FKS|1|L3|G|16
8FKS|1|L3|A|17
8FKS|1|L3|C|18
Current chains
- Chain L1
- 5.8S rRNA
- Chain L3
- 28S rRNA
Nearby chains
- Chain L9
- 60S ribosomal protein L15
- Chain LH
- 60S ribosomal protein L23a
- Chain LS
- 60S ribosomal protein L35
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