IL_8FKS_072

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CUG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUG,CAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKS_072 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1358

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8FKS|1|L3|C|4593
8FKS|1|L3|U|4594
8FKS|1|L3|G|4595
*
8FKS|1|L3|C|4615
8FKS|1|L3|A|4616
8FKS|1|L3|G|4617

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L3

Chain SK

Eukaryotic translation initiation factor 6

Chain SR

GTP-binding protein 4