IL_8FKS_078

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKS_078 not in the Motif Atlas

Geometric match to IL_6CZR_145

Geometric discrepancy: 0.2963

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8FKS|1|L3|A|4681
8FKS|1|L3|U|4682
8FKS|1|L3|U|4683
8FKS|1|L3|A|4684
8FKS|1|L3|U|4685
*
8FKS|1|L3|A|4705
8FKS|1|L3|G|4706
8FKS|1|L3|A|4707
8FKS|1|L3|A|4708
8FKS|1|L3|U|4709

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain NF

Ribosome biogenesis protein NSA2 homolog

Chain SG

60S ribosomal protein L9