IL_8FKS_087

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

UUCG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKS_087 not in the Motif Atlas

Geometric match to IL_3TZR_003

Geometric discrepancy: 0.2038

The information below is about IL_3TZR_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8FKS|1|L3|U|4972
8FKS|1|L3|U|4973
8FKS|1|L3|C|4974
8FKS|1|L3|G|4975
*
8FKS|1|L3|C|4983
8FKS|1|L3|C|4984
8FKS|1|L3|U|4985
8FKS|1|L3|G|4986

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L3

Chain NN

Suppressor of SWI4 1 homolog