IL_8FKS_094

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CCG*CGCG

Length

7 nucleotides

Bulged bases

8FKS|1|L3|C|696

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKS_094 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.2287

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8FKS|1|L3|C|459
8FKS|1|L3|C|460
8FKS|1|L3|G|461
*
8FKS|1|L3|C|694
8FKS|1|L3|G|695
8FKS|1|L3|C|696
8FKS|1|L3|G|697

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L28

Chain SC

60S ribosomal protein L6