IL_8FKT_072

3D structure

PDB id

8FKT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

AGA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKT_072 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1072

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8FKT|1|L3|A|3945
8FKT|1|L3|G|3946
8FKT|1|L3|A|3947
*
8FKT|1|L3|U|4066
8FKT|1|L3|U|4067
8FKT|1|L3|U|4068

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SY

Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase