IL_8FKT_105

3D structure

PDB id

8FKT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKT_105 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.2948

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8FKT|1|L3|A|5014
8FKT|1|L3|G|5015
8FKT|1|L3|A|5016
8FKT|1|L3|G|5017
*
8FKT|1|L3|C|5032
8FKT|1|L3|G|5033
8FKT|1|L3|A|5034
8FKT|1|L3|U|5035

Current chains

Chain L3

28S rRNA

Nearby chains