IL_8FKV_037

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKV_037 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.2951

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8FKV|1|L3|C|1431
8FKV|1|L3|G|1432
8FKV|1|L3|A|1433
8FKV|1|L3|G|1434
*
8FKV|1|L3|C|1450
8FKV|1|L3|G|1451
8FKV|1|L3|A|1452
8FKV|1|L3|G|1453

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L18

Chain NB

Guanine nucleotide-binding protein-like 3

Chain NO

Ribosomal RNA processing protein 1 homolog A