IL_8FKV_054

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

8FKV|1|L3|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKV_054 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1019

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8FKV|1|L3|G|2001
8FKV|1|L3|A|2002
8FKV|1|L3|G|2003
8FKV|1|L3|U|2004
8FKV|1|L3|G|2005
*
8FKV|1|L3|C|2014
8FKV|1|L3|U|2015
8FKV|1|L3|C|2016

Current chains

Chain L3

28S rRNA

Nearby chains

Chain BA

60S ribosomal protein L12

Chain NF

Ribosome biogenesis protein NSA2 homolog

Chain SQ

mRNA turnover protein 4 homolog