IL_8FKV_058
3D structure
- PDB id
- 8FKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State D1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 8FKV|1|L3|U|2305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FKV_058 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.1264
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8FKV|1|L3|C|2302
8FKV|1|L3|C|2303
8FKV|1|L3|U|2304
8FKV|1|L3|U|2305
8FKV|1|L3|G|2306
8FKV|1|L3|A|2307
8FKV|1|L3|A|2308
8FKV|1|L3|G|2309
*
8FKV|1|L3|U|2329
8FKV|1|L3|G|2330
8FKV|1|L3|G|2331
8FKV|1|L3|A|2332
8FKV|1|L3|G|2333
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L17
- Chain LI
- 60S ribosomal protein L26
- Chain LQ
- 60S ribosomal protein L32
- Chain NM
- Protein MAK16 homolog
- Chain NS
- Ribosome production factor 1
- Chain SA
- 60S ribosomal protein L4
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