IL_8FKV_069

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

8FKV|1|L3|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKV_069 not in the Motif Atlas

Geometric match to IL_2VPL_002

Geometric discrepancy: 0.2511

The information below is about IL_2VPL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8FKV|1|L3|G|3916
8FKV|1|L3|A|3917
*
8FKV|1|L3|U|4384
8FKV|1|L3|A|4385
8FKV|1|L3|C|4386

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NF

Ribosome biogenesis protein NSA2 homolog

Chain NH

60S ribosome subunit biogenesis protein NIP7 homolog

Chain SN

Probable rRNA-processing protein EBP2