IL_8FKV_072

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

AGA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKV_072 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.107

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8FKV|1|L3|A|3945
8FKV|1|L3|G|3946
8FKV|1|L3|A|3947
*
8FKV|1|L3|U|4066
8FKV|1|L3|U|4067
8FKV|1|L3|U|4068

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SY

Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase