IL_8FKV_089

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKV_089 not in the Motif Atlas

Geometric match to IL_4E48_005

Geometric discrepancy: 0.1053

The information below is about IL_4E48_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8FKV|1|L3|U|4638
8FKV|1|L3|G|4639
8FKV|1|L3|C|4640
*
8FKV|1|L3|G|4659
8FKV|1|L3|G|4660
8FKV|1|L3|G|4661

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NI

ATP-dependent RNA helicase DDX54

Chain SV

Probable ribosome biogenesis protein RLP24