IL_8FKV_106

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKV_106 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.2877

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8FKV|1|L3|A|5014
8FKV|1|L3|G|5015
8FKV|1|L3|A|5016
8FKV|1|L3|G|5017
*
8FKV|1|L3|C|5032
8FKV|1|L3|G|5033
8FKV|1|L3|A|5034
8FKV|1|L3|U|5035

Current chains

Chain L3

28S rRNA

Nearby chains