IL_8FKW_072
3D structure
- PDB id
- 8FKW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State D2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GA*UAC
- Length
- 5 nucleotides
- Bulged bases
- 8FKW|1|L3|A|4385
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FKW_072 not in the Motif Atlas
- Geometric match to IL_2VPL_002
- Geometric discrepancy: 0.2521
- The information below is about IL_2VPL_002
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_14190.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 160
Unit IDs
8FKW|1|L3|G|3916
8FKW|1|L3|A|3917
*
8FKW|1|L3|U|4384
8FKW|1|L3|A|4385
8FKW|1|L3|C|4386
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain NF
- Ribosome biogenesis protein NSA2 homolog
- Chain NH
- 60S ribosome subunit biogenesis protein NIP7 homolog
- Chain SN
- Probable rRNA-processing protein EBP2
- Chain ST
- Ribosome biogenesis regulatory protein homolog
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