IL_8FKW_078

3D structure

PDB id

8FKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKW_078 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.1353

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

8FKW|1|L3|G|3970
8FKW|1|L3|G|3971
8FKW|1|L3|A|3972
8FKW|1|L3|G|3973
*
8FKW|1|L3|C|4038
8FKW|1|L3|G|4039
8FKW|1|L3|C|4040
8FKW|1|L3|C|4041
8FKW|1|L3|G|4042
8FKW|1|L3|G|4043
8FKW|1|L3|U|4044
8FKW|1|L3|G|4045
8FKW|1|L3|A|4046
8FKW|1|L3|A|4047
8FKW|1|L3|A|4048
8FKW|1|L3|U|4049
8FKW|1|L3|A|4050
8FKW|1|L3|C|4051

Current chains

Chain L3

28S rRNA

Nearby chains

Chain BB

60S ribosomal protein L10a

Chain SY

Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase