IL_8FKW_111

3D structure

PDB id

8FKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGCG*CCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKW_111 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.1995

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8FKW|1|L3|G|739
8FKW|1|L3|G|740
8FKW|1|L3|C|741
8FKW|1|L3|G|742
*
8FKW|1|L3|C|922
8FKW|1|L3|C|923
8FKW|1|L3|C|924

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L8

60S ribosomal protein L14