IL_8FKY_008

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKY_008 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.1482

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8FKY|1|L2|C|13
8FKY|1|L2|C|14
*
8FKY|1|L2|G|42
8FKY|1|L2|U|43
8FKY|1|L2|G|44

Current chains

Chain L2

ITS2 rRNA

Nearby chains

Chain SI

60S ribosomal protein L7-like 1

Chain SL

Ribosomal L1 domain-containing protein 1