IL_8FKY_043

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKY_043 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.1492

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

8FKY|1|L3|G|1626
8FKY|1|L3|G|1627
8FKY|1|L3|C|1628
*
8FKY|1|L3|G|1633
8FKY|1|L3|A|1634
8FKY|1|L3|C|1635

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SJ

pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3