IL_8FKY_068
3D structure
- PDB id
- 8FKY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GAGUGG*CGC
- Length
- 9 nucleotides
- Bulged bases
- 8FKY|1|L3|U|2545, 8FKY|1|L3|G|2546
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FKY_068 not in the Motif Atlas
- Geometric match to IL_5J7L_009
- Geometric discrepancy: 0.2158
- The information below is about IL_5J7L_009
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
8FKY|1|L3|G|2542
8FKY|1|L3|A|2543
8FKY|1|L3|G|2544
8FKY|1|L3|U|2545
8FKY|1|L3|G|2546
8FKY|1|L3|G|2547
*
8FKY|1|L3|C|2772
8FKY|1|L3|G|2773
8FKY|1|L3|C|2774
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain SI
- 60S ribosomal protein L7-like 1
- Chain SM
- Pescadillo homolog
- Chain SS
- Ribosome biogenesis protein BOP1
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