IL_8FKZ_004

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UAA*UCGA

Length

7 nucleotides

Bulged bases

8FKZ|1|L1|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKZ_004 not in the Motif Atlas

Homologous match to IL_5TBW_145

Geometric discrepancy: 0.2034

The information below is about IL_5TBW_145

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8FKZ|1|L1|U|64
8FKZ|1|L1|A|65
8FKZ|1|L1|A|66
*
8FKZ|1|L1|U|92
8FKZ|1|L1|C|93
8FKZ|1|L1|G|94
8FKZ|1|L1|A|95

Current chains

Chain L1

5.8S rRNA

Nearby chains

Chain L3

Large subunit ribosomal RNA; LSU rRNA

Chain LI

60S ribosomal protein L26

Chain LS

60S ribosomal protein L35

Chain LW

60S ribosomal protein L37