IL_8FKZ_103

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8FKZ|1|L3|G|4522, 8FKZ|1|L3|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKZ_103 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.155

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8FKZ|1|L3|C|4456
8FKZ|1|L3|U|4457
8FKZ|1|L3|C|4458
*
8FKZ|1|L3|G|4520
8FKZ|1|L3|U|4521
8FKZ|1|L3|G|4522
8FKZ|1|L3|A|4523
8FKZ|1|L3|G|4524

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L3

Chain SR

GTP-binding protein 4