IL_8FKZ_113

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

8FKZ|1|L3|U|4634, 8FKZ|1|L3|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKZ_113 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.1914

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8FKZ|1|L3|U|4632
8FKZ|1|L3|G|4633
8FKZ|1|L3|U|4634
8FKZ|1|L3|A|4635
8FKZ|1|L3|U|4636
8FKZ|1|L3|G|4637
*
8FKZ|1|L3|C|4662
8FKZ|1|L3|G|4663
8FKZ|1|L3|A|4664
8FKZ|1|L3|A|4665
8FKZ|1|L3|G|4666

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L3

Chain LP

60S ribosomal protein L31

Chain SV

Probable ribosome biogenesis protein RLP24