IL_8FL0_089

3D structure

PDB id

8FL0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State H)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

GUA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL0_089 not in the Motif Atlas

Geometric match to IL_4KNQ_002

Geometric discrepancy: 0.1235

The information below is about IL_4KNQ_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8FL0|1|L3|G|4201
8FL0|1|L3|U|4202
8FL0|1|L3|A|4203
*
8FL0|1|L3|U|4229
8FL0|1|L3|C|4230
8FL0|1|L3|C|4231

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L5

60S ribosomal protein L11

Chain LE

60S ribosomal protein L21

Chain ST

Ribosome biogenesis regulatory protein homolog