IL_8FL2_049

3D structure

PDB id

8FL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL2_049 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2833

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FL2|1|L3|G|1425
8FL2|1|L3|G|1426
8FL2|1|L3|A|1427
8FL2|1|L3|U|1428
8FL2|1|L3|C|1429
*
8FL2|1|L3|G|1455
8FL2|1|L3|C|1456
8FL2|1|L3|G|1457
8FL2|1|L3|C|1458
8FL2|1|L3|A|1459
8FL2|1|L3|C|1460

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L18