IL_8FL2_135

3D structure

PDB id

8FL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GGAG*CGCC(OMG)GUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL2_135 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.1502

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

8FL2|1|L3|G|3970
8FL2|1|L3|G|3971
8FL2|1|L3|A|3972
8FL2|1|L3|G|3973
*
8FL2|1|L3|C|4038
8FL2|1|L3|G|4039
8FL2|1|L3|C|4040
8FL2|1|L3|C|4041
8FL2|1|L3|OMG|4042
8FL2|1|L3|G|4043
8FL2|1|L3|U|4044
8FL2|1|L3|G|4045
8FL2|1|L3|A|4046
8FL2|1|L3|A|4047
8FL2|1|L3|A|4048
8FL2|1|L3|U|4049
8FL2|1|L3|A|4050
8FL2|1|L3|C|4051

Current chains

Chain L3

28S rRNA

Nearby chains

Chain BB

60S ribosomal protein L10a

Chain NT

Protein SDA1 homolog

Chain NY

Proline-, glutamic acid- and leucine-rich protein 1