IL_8FL2_201

3D structure

PDB id

8FL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GUAC*(OMG)UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL2_201 not in the Motif Atlas

Geometric match to IL_3PDR_004

Geometric discrepancy: 0.2754

The information below is about IL_3PDR_004

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8FL2|1|L3|G|4201
8FL2|1|L3|U|4202
8FL2|1|L3|A|4203
8FL2|1|L3|C|4204
*
8FL2|1|L3|OMG|4228
8FL2|1|L3|U|4229
8FL2|1|L3|C|4230

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NT

Protein SDA1 homolog

Chain NU

Testis-expressed protein 10