IL_8FL3_015

3D structure

PDB id

8FL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

8FL3|1|L3|C|181

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL3_015 not in the Motif Atlas

Geometric match to IL_3HHN_003

Geometric discrepancy: 0.2626

The information below is about IL_3HHN_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8FL3|1|L3|C|180
8FL3|1|L3|C|181
8FL3|1|L3|G|182
*
8FL3|1|L3|C|255
8FL3|1|L3|G|256

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L6

60S ribosomal protein L13

Chain LS

60S ribosomal protein L35