IL_8FL3_077

3D structure

PDB id

8FL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

8FL3|1|L3|C|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL3_077 not in the Motif Atlas

Geometric match to IL_4C7O_003

Geometric discrepancy: 0.3593

The information below is about IL_4C7O_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8FL3|1|L3|C|2083
8FL3|1|L3|C|2084
8FL3|1|L3|G|2085
*
8FL3|1|L3|C|2272
8FL3|1|L3|G|2273

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L18

Chain LQ

60S ribosomal protein L32

Chain SA

60S ribosomal protein L4

Chain SD

60S ribosomal protein L7