IL_8FL3_097
3D structure
- PDB id
- 8FL3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State I2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.53 Å
Loop
- Sequence
- GGGAA*U(OMC)C
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FL3_097 not in the Motif Atlas
- Geometric match to IL_7RQB_093
- Geometric discrepancy: 0.3608
- The information below is about IL_7RQB_093
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.2
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 8
Unit IDs
8FL3|1|L3|G|2846
8FL3|1|L3|G|2847
8FL3|1|L3|G|2848
8FL3|1|L3|A|2849
8FL3|1|L3|A|2850
*
8FL3|1|L3|U|3840
8FL3|1|L3|OMC|3841
8FL3|1|L3|C|3842
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain LG
- 60S ribosomal protein L23
- Chain LN
- 60S ribosomal protein L3
- Chain NC
- Nucleolar GTP-binding protein 2
- Chain NP
- Zinc finger protein 593
- Chain SV
- Probable ribosome biogenesis protein RLP24
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