IL_8FL3_109

3D structure

PDB id

8FL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

C(OMC)AG*CG

Length

6 nucleotides

Bulged bases

8FL3|1|L3|A|3702

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL3_109 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.5922

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8FL3|1|L3|C|3700
8FL3|1|L3|OMC|3701
8FL3|1|L3|A|3702
8FL3|1|L3|G|3703
*
8FL3|1|L3|C|3749
8FL3|1|L3|G|3750

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NC

Nucleolar GTP-binding protein 2

Chain NT

Protein SDA1 homolog

Chain SF

60S ribosomal protein L8