IL_8FL3_113

3D structure

PDB id

8FL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL3_113 not in the Motif Atlas

Geometric match to IL_6CK5_002

Geometric discrepancy: 0.3148

The information below is about IL_6CK5_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

8FL3|1|L3|G|3710
8FL3|1|L3|A|3711
8FL3|1|L3|A|3712
8FL3|1|L3|U|3713
8FL3|1|L3|G|3714
*
8FL3|1|L3|C|3739
8FL3|1|L3|G|3740
8FL3|1|L3|C|3741

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NC

Nucleolar GTP-binding protein 2

Chain NT

Protein SDA1 homolog