IL_8FL3_134

3D structure

PDB id

8FL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GUACAC*G(OMU)(OMG)UC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL3_134 not in the Motif Atlas

Geometric match to IL_4V88_393

Geometric discrepancy: 0.3461

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

8FL3|1|L3|G|4201
8FL3|1|L3|U|4202
8FL3|1|L3|A|4203
8FL3|1|L3|C|4204
8FL3|1|L3|A|4205
8FL3|1|L3|C|4206
*
8FL3|1|L3|G|4226
8FL3|1|L3|OMU|4227
8FL3|1|L3|OMG|4228
8FL3|1|L3|U|4229
8FL3|1|L3|C|4230

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NT

Protein SDA1 homolog

Chain NU

Testis-expressed protein 10