IL_8FL3_198

3D structure

PDB id

8FL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GA(PSU)*AC

Length

5 nucleotides

Bulged bases

8FL3|1|L3|A|4292

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL3_198 not in the Motif Atlas

Homologous match to IL_8GLP_309

Geometric discrepancy: 0.1185

The information below is about IL_8GLP_309

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

8FL3|1|L3|G|4291
8FL3|1|L3|A|4292
8FL3|1|L3|PSU|4293
*
8FL3|1|L3|A|4317
8FL3|1|L3|C|4318

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NT

Protein SDA1 homolog