IL_8FL6_043

3D structure

PDB id

8FL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

8FL6|1|L3|C|1214, 8FL6|1|L3|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL6_043 not in the Motif Atlas

Geometric match to IL_4WF9_034

Geometric discrepancy: 0.3219

The information below is about IL_4WF9_034

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8FL6|1|L3|C|1082
8FL6|1|L3|U|1083
8FL6|1|L3|C|1084
*
8FL6|1|L3|G|1213
8FL6|1|L3|C|1214
8FL6|1|L3|C|1215
8FL6|1|L3|C|1216
8FL6|1|L3|G|1217

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L29

Chain SD

60S ribosomal protein L7