IL_8FL6_067

3D structure

PDB id

8FL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

8FL6|1|L3|G|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL6_067 not in the Motif Atlas

Geometric match to IL_4V88_442

Geometric discrepancy: 0.3658

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

8FL6|1|L3|C|1814
8FL6|1|L3|G|1815
8FL6|1|L3|C|1816
*
8FL6|1|L3|G|1823
8FL6|1|L3|G|1824

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L21

Chain LM

60S ribosomal protein L29

Chain SB

60S ribosomal protein L5