IL_8FL7_065

3D structure

PDB id

8FL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

U(PSU)UG*C(A2M)GA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL7_065 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.2792

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8FL7|1|L3|U|1861
8FL7|1|L3|PSU|1862
8FL7|1|L3|U|1863
8FL7|1|L3|G|1864
*
8FL7|1|L3|C|1870
8FL7|1|L3|A2M|1871
8FL7|1|L3|G|1872
8FL7|1|L3|A|1873

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SR

GTP-binding protein 4