3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
GCC*GAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FL9_005 not in the Motif Atlas
Geometric match to IL_1Y27_001
Geometric discrepancy: 0.1603
The information below is about IL_1Y27_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8FL9|1|L1|G|139
8FL9|1|L1|C|140
8FL9|1|L1|C|141
*
8FL9|1|L3|G|16
8FL9|1|L3|A|17
8FL9|1|L3|C|18

Current chains

Chain L1
5.8S rRNA
Chain L3
28S rRNA

Nearby chains

Chain L9
60S ribosomal protein L15
Chain LH
60S ribosomal protein L23a
Chain LS
60S ribosomal protein L35
Chain LW
60S ribosomal protein L37

Coloring options:


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